RNA Sequence Visualizer

mRNA Comparison

Data Source

Sample eGFP Data

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Using built-in eGFP sequence analysis data with 401 sequences from 6 different design methods.

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Expected columns: EFE, CAI, method, AUP, tAI, CPB, ENC, %U, %GC, etc.

Plot Controls

X-axis Metric:

Y-axis Metric:

Design Methods:

CDSFold

LinearDesign

Genetic Algorithm

CUSTOM

Mauger et al.

Schneckener

Show background sequences

Point Size:

Sequence Information

Total sequences:

Background sequences: 1,300,000+

Design sequences:

EFE: Ensemble Free Energy

CAI: Codon Adaptation Index

AUP: Average Unpaired Probability

tAI: tRNA Adaptation Index

CPB: Codon Pair Bias

ENC: Effective Codon Number